VMD Tutorial

Next: Introduction

University of Illinois at Urbana-Champaign
Beckman Institute for Advanced Science and Technology
Theoretical and Computational Biophysics Group
Computational Biophysics Workshop

Using VMD

$\includegraphics[height=2.5in]{FIGS/u2-persp}$

VMD Developer:
John E. Stone

Tutorial Contributors:
Alek Aksimentiev, Anton Arkhipov, Reuven Birnbaum, Robert Brunner, Jordi Cohen, Brijeet Dhaliwal, John Eargle, Jen Hsin, Fatemeh Khalili, Eric H. Lee, Zan Luthey-Schulten, Patrick O'Donoghue, Elijah Roberts, Anurag Sethi, Marcos Sotomayor, John E. Stone, Emad Tajkhorshid, Leonardo Trabuco, Elizabeth Villa, Yi Wang, David Wells, Dan Wright, Ying Yin

Aug. 2019

$\fbox{ \begin{minipage}[c]{\textwidth} \centering{\noindent\small{\small A cur... ...tt tutorial-l@ks.uiuc.edu} mailing list for additional help.}} \end{minipage} }$

Introduction
- Downloading VMD
- Tutorial Topics and Files
Working with a Single Molecule
Trajectories and Movie Making
Scripting in VMD
Data Analysis in VMD
Working with Multiple Molecules
- Main Menu Molecule List Browser
- Aligning Molecules with the measure fit Command
Comparing Structures and Sequences with MultiSeq
Running VMD on Supercomputers
Final Remarks
- Citing VMD

vmd@ks.uiuc.edu