Re: RAMD seed number

From: Aashish Bhatt (aashish.ph16221_at_inst.ac.in)
Date: Wed Aug 05 2020 - 05:31:11 CDT

Thank you for the information sir.

I am looking at the code.

On Wed, Aug 5, 2020 at 1:05 PM Vlad Cojocaru <v.cojocaru_at_hubrecht.eu> wrote:

> Hi Aashish,
>
> This is an integer number that gives the seed for the random number
> generator used to define the force direction. I do not recall to have
> any special requirements for it but if there are, the manual should tell
> you.
>
> For further details on how the force direction in generated, please take
> a look at the tcl code ... It should be possible to read it by yourself
> or together with someone that has some coding experience (in case you do
> not) ....
>
> Best
> Vlad
>
> On 2020-06-29 15:31, Aashish Bhatt wrote:
> > Dear Sir
> >
> > I am trying to perform a RAMD calculation for my protein and ligand.
> > Sir, I read the RAMD section in the NAMD manual.
> > sir on which basis do I define the RAMDSeed value for example if I
> > want to run a different trajectory with identical parameter.
> > Can I take any number? and how the number is related to the simulation?
> >
> >
> > Best Regards
> >
> > Aashish
>
> --
> Vlad Cojocaru, Ph.D., Habil.
> ---------------------------------------------
> Hubrecht Fellow - Group Leader
> In Silico Biomolecular Structure and Dynamics
> Hubrecht Institute
> Uppsalalaan 8, 3584 CT, Utrecht
> The Netherlands
> ---------------------------------------------
> Tel: +31-30-212-1959;
> Email: v.cojocaru[at]hubrecht.eu
> https://www.hubrecht.eu/research-groups/cojocaru-group/
>
>

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