(no subject)

From: vivek nani (viveknani786_at_gmail.com)
Date: Thu Dec 05 2019 - 03:43:47 CST

Dear NAMD users,

This might be a naive question.

Let's say my molecule has a break in its structure i.e., a kink present in
the backbone.

Will NAMD recognize this? Can I see more fluctuations in the molecule when
compared to a single straight backbone with no kinks?

Or will it depend on the parameters I use? I mean that if my parameters
recognize the kink as an improper, then I can see the difference.

Let me know what you think.

Thanks in advance.

This archive was generated by hypermail 2.1.6 : Thu Dec 31 2020 - 23:17:12 CST