RE: Error while runing simulation for protein docking

From: Vermaas, Joshua (
Date: Mon Oct 07 2019 - 09:50:44 CDT

Two things:

Did you take the topology-specific information out of the file passed to NAMD? NAMD's parser doesn't like those lines.

Do you have a blank line at the end? Sometimes these weird errors come if there is still input on the last line of the file.


On 2019-10-06 14:08:32-06:00 wrote:

Dear NAMD users
Please can some body help me in solving the following error which i got while running the simulation after generating the topology and parameter file using CGenff programm.
Error is :
FATAL ERROR: BUFFER OVERRUN - buffer=** Toppar stream file generated by
* CHARMM General Force Field (CGenFF) program version 2.2.0
* For use with CGenFF version 4.0
Shobhit Jain

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