Re: Building of NAMD on the Linux cluster with InfiniBand

From: Aravinda Munasinghe (
Date: Mon Apr 15 2019 - 10:41:08 CDT

Are you using intel or gnu to compile charmm?.
Aravinda Munasinghe

On Mon, Apr 15, 2019 at 7:08 AM Арслан Кусмаев <>

> Dear all!
> I'm new to NAMD. Now I'm trying to build NAMD on the Linux cluster with
> InfiniBand, Intel Xeon E5-2690 (Sandy Bridge) and Intel Xeon Phi 7110X
> (KNC) processors. CentOS release 6.2. But when I compiled charm-6.8.2
> according to instructions, I got the following error:
> -sh-4.1$ ./charmrun ++mpiexec +p4 ./pgm
> Charmrun> scalable start enabled.
> Charmrun> IBVERBS version of charmrun
> mpiexec_login: cannot connect to local mpd (/tmp/mpd2.console_kusmaev);
> possible causes:
> 1. no mpd is running on this host
> 2. an mpd is running but was started without a "console" (-n option)
> Charmrun> error attaching to node '':
> Timeout waiting for node-program to connect
> I don't have an idea how to fix it. Thanks for any help. A full log is
> below.

Aravinda Munasinghe,

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