From: Ivan Gregoretti (ivangreg_at_gmail.com)
Date: Wed Mar 26 2014 - 17:11:58 CDT
Hello Flora,
Would you mind sharing with us three key pieces of information?
1) the command you are running.
2) the second line of your config file
3) Whether you succeeded following the tutorials for analysis of the
ubiquitin structure with VMD and NAMD.
Cheers,
Ivan
Ivan Gregoretti, PhD
Bioinformatics
On Wed, Mar 26, 2014 at 5:00 AM, Flora Chettiar <rheyaflora_at_gmail.com>wrote:
> Hello,
> I am Flora Chettiar, pursuing my M.Sc Bioinformatics (2012-2014) from
> University of Mumbai.
>
> I am trying to apply Molecular Dynamic Simulation for my dissertation work.
> For this I am using VMD NAMD. The structure used is modelled using
> SwissModel.
>
> But while processing in the command prompt, I am getting error:
> 1) Error parsing the config file (line 2 in config file).
> and sometimes
> 2) Error on request socket
>
> Please help me to solve this error.
>
> Awaiting for your reply at the earliest possible
>
> --
> Regards,
> Flora Chettiar.
>
>
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