From: Monika Madhavi (monikamadhavi_at_gmail.com)
Date: Sat Aug 04 2012 - 01:04:24 CDT
Do you know how to do it with VMD? coz I used VMD nanotube builder to
create the graphene sheet.
Thanks for your reply.
On Sat, Aug 4, 2012 at 6:00 AM, farzad kiani <farzad_kiani1364_at_yahoo.com>wrote:
> you can use Vega zz or VMD
> in vega load your pdb files and save as xplor psf
> if you use vega you should modify your atom type in psf file if your atom
> type is "?"
> and you should set graphene force field in charm file that you can run
> with namd
> *From:* Monika Madhavi <monikamadhavi_at_gmail.com>
> *To:* namd-l_at_ks.uiuc.edu
> *Sent:* Saturday, August 4, 2012 8:05 AM
> *Subject:* namd-l: How to create psf for graphene
> Dear all,
> I created a graphene sheet using nanotube builder and obtained pdb file by
> saving coordinates. How can I obtain the psf file for the sheet?
> Thank you.
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