Re: script for calculation of an rmsd

From: Chris Harrison (
Date: Sun Oct 31 2010 - 08:28:58 CDT

Dear Maria,

Use VMD. Under Extensions menu: Extensions>Analysis>RMSD Trajectory Tool


On Sat, Oct 30, 2010 at 3:41 AM, <> wrote:

> Hi, I want to calculate the rmsd of an antibiotic with a script, but I have
> script only for proteins. Could anyone tell me where I can find. Also, I
> want
> to learn how to write script. I must read tutorials of tcl only or
> something
> especially for namd?
> Thank you in advance.
> Maria

Chris Harrison, Ph.D.
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801                            Voice: 217-244-1733               Fax: 217-244-6078

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:54:42 CST