script for calculation of an rmsd

Date: Sat Oct 30 2010 - 03:41:41 CDT

Hi, I want to calculate the rmsd of an antibiotic with a script, but I have
script only for proteins. Could anyone tell me where I can find. Also, I want
to learn how to write script. I must read tutorials of tcl only or something
especially for namd?
Thank you in advance.

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