RE: Replica exchange MD

From: Ana Celia Araujo Vila Verde (
Date: Tue May 29 2007 - 14:51:45 CDT

I've found these useful (not reviews, but useful papers)
Periole X and Mark A E 2007 Convergence and sampling efficiency in replica exchange simulations of peptide folding in explicit solvent J. Chem. Phys. 126
Sugita Y and Okamoto Y 1999 Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314 141-151

Wei G H and Shea J E 2006 Effects of solvent on the structure of the Alzheimer amyloid-beta(25-35) peptide Biophys. J. 91 1638-1647



From: on behalf of L. Michel Espinoza-Fonseca
Sent: Tue 5/29/2007 1:47 PM
Subject: namd-l: Replica exchange MD

Hi all,

Does anybody know any good review on Replica Exchange MD simulations?
I'm very interested in trying it with NAMD, but I haven't found any
paper where the pros and cons are described/discussed.

Thank you.


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