From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Wed May 30 2007 - 14:03:35 CDT
Thank you for your comments.
Cheers,
Michel
2007/5/29, Ana Celia Araujo Vila Verde <avilaverde_at_engr.psu.edu>:
>
>
>
>
> Hi,
>
> I've found these useful (not reviews, but useful papers)
>
> Periole X and Mark A E 2007 Convergence and sampling efficiency in replica
> exchange simulations of peptide folding in explicit solvent J. Chem. Phys.
> 126
>
> Sugita Y and Okamoto Y 1999 Replica-exchange molecular dynamics method for
> protein folding Chem. Phys. Lett. 314 141-151
>
> Wei G H and Shea J E 2006 Effects of solvent on the structure of the
> Alzheimer amyloid-beta(25-35) peptide Biophys. J. 91 1638-1647
>
> Ana
>
> ________________________________
>
> From: owner-namd-l_at_ks.uiuc.edu on behalf of L. Michel Espinoza-Fonseca
> Sent: Tue 5/29/2007 1:47 PM
> To: NAMD
> Subject: namd-l: Replica exchange MD
>
>
>
>
> Hi all,
>
> Does anybody know any good review on Replica Exchange MD simulations?
> I'm very interested in trying it with NAMD, but I haven't found any
> paper where the pros and cons are described/discussed.
>
> Thank you.
>
> Cheers,
> Michel
>
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