about protonation of HIS in membrane protein

From: Baoqiang Cao (caobg_at_email.uc.edu)
Date: Wed Apr 13 2005 - 09:21:08 CDT

• Next message: Charles Danko: "Re: Periodic cell has become too small for original patch grid"
• Previous message: Marc Q. Ma: "Re: AMBER ff system has too high velocities in NAMD"
• Next in thread: Aaron Oakley: "Re: about protonation of HIS in membrane protein"
• Reply: Aaron Oakley: "Re: about protonation of HIS in membrane protein"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hi there,

Usually we set HIS as HSE for simplicity, I am just wondering, isn't it more correct if we set it according to its position, I mean, cytoplasmic, inter membrance, periplasmic? If so, could anybody point out some references related to settings? If not, any comments, please! Anyway, any comments will be welcomed.
Thanks.

Best,
 Baoqiang Cao

• Next message: Charles Danko: "Re: Periodic cell has become too small for original patch grid"
• Previous message: Marc Q. Ma: "Re: AMBER ff system has too high velocities in NAMD"
• Next in thread: Aaron Oakley: "Re: about protonation of HIS in membrane protein"
• Reply: Aaron Oakley: "Re: about protonation of HIS in membrane protein"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:39:20 CST