From: Roy Campbell (campro_at_wwc.edu)
Date: Fri Sep 10 2004 - 12:24:05 CDT
When I try to run namd under Clustermatic 4
(NAMD_build_2004-Mar-11.26221/) I get a "Timeout waiting for
node-program to connect", the output is listed below. It runs just fine
using +p1. Can anyone help?
Roy Campbell
Physics Department
Walla Walla College
[grendel_at_physics-beowulf NAMD_2.5_Linux-i686-Clustermatic4]$ ./charmrun
+p4 ++verbose ./namd2 src/alanin
Charmrun> charmrun started...
Charmrun> node -1 status: up
Charmrun> adding client 0: "-1", IP:10.0.0.1
Charmrun> node 0 status: s/-1
Charmrun> node 1 status: s/-1
Charmrun> node 2 status: up
Charmrun> adding client 1: "2", IP:10.0.0.2
Charmrun> node 3 status: up
Charmrun> adding client 2: "3", IP:10.0.0.3
Charmrun> node 4 status: up
Charmrun> adding client 3: "4", IP:10.0.0.4
Charmrun> There are 3 slave nodes available.
Charmrun> Charmrun = 10.0.0.1, port = 1087
Charmrun> start node program on slave node: -1.
Charmrun> start node program on slave node: 2.
Charmrun> start node program on slave node: 3.
Charmrun> start node program on slave node: 4.
Charmrun> node programs all started
Charmrun> Waiting for 0-th client to connect.
Charmrun> client 0 connected (IP=10.0.0.1 data_port=1028)
Charmrun> Waiting for 1-th client to connect.
Charmrun> error 1 attaching to node:
Timeout waiting for node-program to connect
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