From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Wed Jun 02 2004 - 16:07:28 CDT
Hello Jeny,
What part of this page has you stuck?
http://www.ks.uiuc.edu/Research/namd/current/ug/node15.html
if you are needing to use the amber functions of NAMD then you must have a
an amber parm file laying around. This rest is as stated on the above web
page.
Brian
On Wed, 2 Jun 2004 jz7_at_duke.edu wrote:
> Dear all,
>
> I am trying to use Amber force field in NAMD. After reading the User's
> manual, I am still not quite clear about how to do that. So I am
> wondering if there are some sample inputs for generating PSF file,
> minimization, etc. I have some experience on using NAMD with Charmm
> force field. What's the difference between using Amber and using Charmm
> in NAMD?
>
> Thanks a lot!
>
> Sincerely,
> Jeny
>
*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
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