Re: Running on Alpha cluster

From: Gengbin Zheng (
Date: Mon Mar 15 2004 - 10:07:24 CST


 I think we haven't compile and test Linux Alpha cluster for a long time.
But you can try. First download the *latest* charm-5.8 from *cvs* (I have
made some changes for the config files for Alpha cluster, by guess though
since I don't have account). Checkout out the
charm5-8 link on
 try charm charm++ using cxx:
 ./build charm++ mpi-linux-axp cxx .....
 and NAMD by:
 ./config .... Linux-Alpha-MPI-cxx

 let me know if this works,


On Sat, 13 Mar 2004, Alex V. wrote:

> Hi everybody!!
> I have the following question:
> what will I need to run NAMD on cluster,
> consisting of Alpha 21264 (2 x 667 МHz) processors,
> running on Marynet 2000 ?
> They have Red Hat Linux 6.2 (with SMP support) on each node.
> The parallel software is MPICH for GM with queuing system, so
> one should run task as follows (as it is written in their computer
> center's manual):
> mpirun [mpi_args] <prgm_name> [prgm_args]
> Should I recompile NAMD from sources to run on such cluster,
> or are there compatible binaries from NAMD download page???
> Thanks in advance!!!
> Alex

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