Re: Clustermatic 4.0

From: Gengbin Zheng (
Date: Fri Mar 12 2004 - 21:36:16 CST

There is no binary of NAMD 2.5 distributed for Clustermatic 4.0.
But you can compile NAMD from source. It should run, I had solved the
compatibility problems.
However, as far as I know, the smp version of NAMD still has
compatibility problem. (smp version is using multithreading and running
one NAMD process for each node while runing multiple threads on each
processor of the node)
The smp version on Scyld was slightly faster than the non-smp version, so
we are still trying to make it work.


On Mon, 8 Mar 2004, Jerry Ebalunode wrote:

> Hi Jim,
> Is NAMD 2.5 binaries currently compatible with Clustermatic 4.0 ? I was
> thinking of upgrading my cluster from version 3.0 to 4.0 but stopped to ask
> if there are any new problems or if the previous problems with compatibility
> has been resolved when running NAMD in parallel using Clustermatic 4.0.
> Thanks for your reply.
> --
> Cheers,
> Jerry Ebalunode
> Graduate Research Assistant
> RM 402F Houston Science Center
> Phone: 713-743-8367
> Dept. of Biology and Biochemistry
> University of Houston.
> 4800 Calhoun Road
> Houston, TX 77204

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