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A copy of the files needed for these exercises exists in a directory called Workshop in your home directory. In a terminal window, move to this directory by typing:

cd ~/Workshop/10Ala-tutorial/files/

The content of this directory is shown in Fig. 2 below.

Figure: Directory structure for the tutorial exercises.
\includegraphics[width=12cm]{sources/deca-alanine-files}\end{center} \end{figure}

The following programs are used throughout this tutorial.