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Contents
List of Figures
List of Tables
Introduction
Guide organization
Document style conventions
For more information on VMD and MDScope
Contacting the authors
Credits and Program Reference
Copyright and Disclaimer
Registering VMD
Acknowledgments
Source Code File Structure
Directory tree structure
Using the RCS system
Using the Configure Script and Makefile
The configure script
Setting the configuration parameters
Installation parameters
Compilation parameters
Configuring the Makefile
Optional program components
Supported operating systems
Compiling VMD
Note for RCS users:
Makefile commands
src
directory Makefile commands
doc
directory Makefile commands
Makefile commands for either directory
Changing the configure script
Adding new configurable parameters
Adding new configuration options
Adding support for a new architecture
Source Code Style Guide
Naming conventions
Class names
Class member variable names
Class member function names
Global variable names
Global function names
Source code file names
Documentation file names
Creating new files
File formats
Program Structure
Program component descriptions
Utility objects
Display objects
Device-Specific Rendering.
Drawing Tokens.
objects.
The .
Colors.
Picking Items.
Molecule objects
Remote connection objects
User interface objects
Tracker objects
Main VMD execution loop
External library descriptions
Function and Class Descriptions
Utility functions
Utility objects
DLinkList
Inform
NameList
ResizeArray
Stack
Timer
Display objects
ColorList
ColorUser
DispCmd
DisplayDevice
Displayable
Matrix4
Scene
Molecule objects
Animation
Adding new frames:
Updating the current position:
Atom
BaseMolecule
DrawMolecule
Molecule
Timestep
Remote connection objects
User interface objects
Command
Using a Command object:
Developing a new class derived from Command:
CommandQueue
Mouse
PopupMenu
PopupMenuItem
UIList
UIObject
UIText
Tracker objects
About this document ...
Justin Gullingsrud
Tue Apr 6 09:26:48 CDT 1999