Directory tree structure

When a directory with the VMD source, library, documentation, and other data files is established, the following subdirectories are present:

bin Utility scripts and programs, such as the script used to start the proper architecture-specific VMD\ executable, and the programs used on SGI workstations to change the current stereo mode.

data Data files used when VMD starts up, i.e., .vmdrc and other `dot' files.

doc Latex documentation files.

lib Special libraries and associated header files used by VMD, such as the MDComm library.

proteins Example protein data files used for testing.

src Source code files (.c, .C, and .h files).