Re: fatal error regarding parameters

From: mohammad goodarzi (mo.goodarzi82_at_gmail.com)
Date: Tue Dec 10 2019 - 12:15:01 CST

Adupa,

Yes the attached molecule is there too, can you please tell me how to make
the parameter for it?

Thanks a lot

On Tue, Dec 10, 2019 at 11:28 AM Adupa Vasista <adupavasista_at_gmail.com>
wrote:

> Are there any other molecules other than protein? If so, then you have to
> add the parameters for that molecule too.
>
> and while using CHARMM36, better add carb.prm separately instead of
> lipid_prot_carb.prm
>
> On Tue, Dec 10, 2019 at 10:36 PM mohammad goodarzi <
> mo.goodarzi82_at_gmail.com> wrote:
>
>> Hello,
>>
>> I have read a number of posts but none answered me this question.
>> I am getting error as
>>
>> ------------- Processor 0 Exiting: Called CmiAbort ------------
>>
>> Reason: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE N287
>>
>>
>> Charm++ fatal error:
>>
>> FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE N287
>>
>>
>> Abort trap: 6
>>
>>
>> and my parameters are
>>
>> # Force-Field Parameters
>> paraTypeCharmm on
>> parameters ./par_all36_lipid_prot_carb.prm
>> parameters ./par_all36_lipid.prm
>> parameters ./par_all36_prot.prm
>> parameters ./par_all36_na.prm
>>
>>
>> I just don't know what to add more, whatever I add or remove I get the
>> same error
>>
>> Thanks
>> Mo
>>
>
>
> --
>
> *A.VasistaM.Tech,Department Of Chemical Engineering,*
> *IIT Guwahati.*
>


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