From: Lara rajam (lara.4884_at_gmail.com)
Date: Tue Feb 21 2017 - 17:42:40 CST
I would like to use the torsional restraints in the simulation.
I would like to know how the atom numbers should be given in order.
For eg., when we write a solvated and counterion added pdb, do we need to
take the respective atom number by looking in to it. But, when I read the
constraints and Restraints page
http://www.ks.uiuc.edu/Research/namd/2.9/ug/node27.html , it says In all
cases <atom> is a *zero-based* atom index , so the atom number should be
one less than the pdb file should be given since in pdb file it starts from
any input on this will be much appreciated.
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