Re: Help on mutation

From: Jérôme Hénin (jhenin_at_vitae.cmm.upenn.edu)
Date: Wed Jul 05 2006 - 16:36:22 CDT

Pijush,

You should use a Tcl loop to automate the mutations:
for {set i 1; $i <= MAX; incr i} {
 mutate $i GLY
}

Or you might have to build a list of residue IDs and use

foreach i $reslist {
 mutate $i GLY
}

Jerome

On Sunday 02 July 2006 02:24, Pijush Ghosh wrote:
> Dear All,
>
>
>
> In one of my protein I have around 100 serine domains and I want to
> mutate all of those with some amino acid say GLY.
>
>
>
> The following command:
>
> {mutate 2 GLY}
>
> will only mutate resid 2 to GLY. If I follow this, then I have to write 100
> lines to run psfgen, which sounds very odd. Is there any other way by which
> I can do this easily? Is there any option by which it can mutate the amino
> acids by resname and not resid, in that case life will become lot easier.
>
>
>
> Looking forward for some comment and suggestion.
>
>
>
> Pijush,
>
>
>
> Pijush Ghosh
>
> PhD Student
>
> Department of Civil Engineering
>
> North Dakota State University
>
> Fargo. ND. 58105. USA
>
> Phone:
>
> 701-231-6491(Lab)
>
> 701-231-4341(Res)

-- 
I always fear that creation will expire before tea-time.
  - Rev. Sydney Smith

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