Re: Help on mutation

From: surendra negi (negi009_at_yahoo.com)
Date: Wed Jul 05 2006 - 15:21:16 CDT

If you want to mutate 100's SER then use homology
model structure and then follow NAMD instructions.

--- Pijush Ghosh <pijush.ghosh_at_ndsu.edu> wrote:

> Dear All,
>
>
>
> In one of my protein I have around 100 serine
> domains and I want to mutate
> all of those with some amino acid say GLY.
>
>
>
> The following command:
>
> {mutate 2 GLY}
>
> will only mutate resid 2 to GLY. If I follow this,
> then I have to write 100
> lines to run psfgen, which sounds very odd. Is there
> any other way by which
> I can do this easily? Is there any option by which
> it can mutate the amino
> acids by resname and not resid, in that case life
> will become lot easier.
>
>
>
> Looking forward for some comment and suggestion.
>
>
>
> Pijush,
>
>
>
> Pijush Ghosh
>
> PhD Student
>
> Department of Civil Engineering
>
> North Dakota State University
>
> Fargo. ND. 58105. USA
>
> Phone:
>
> 701-231-6491(Lab)
>
> 701-231-4341(Res)
>
>
>
>

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