From: Gustavo Olivos (tavolivos_at_gmail.com)
Date: Thu Dec 05 2019 - 09:35:48 CST
You could try to fix it with pdbfixer.
El jue., 5 dic. 2019 a las 4:46, vivek nani (<viveknani786_at_gmail.com>)
> Dear NAMD users,
> This might be a naive question.
> Let's say my molecule has a break in its structure i.e., a kink present in
> the backbone.
> Will NAMD recognize this? Can I see more fluctuations in the molecule when
> compared to a single straight backbone with no kinks?
> Or will it depend on the parameters I use? I mean that if my parameters
> recognize the kink as an improper, then I can see the difference.
> Let me know what you think.
> Thanks in advance.
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