From: vivek nani (viveknani786_at_gmail.com)
Date: Thu Dec 05 2019 - 03:43:47 CST
Dear NAMD users,
This might be a naive question.
Let's say my molecule has a break in its structure i.e., a kink present in
Will NAMD recognize this? Can I see more fluctuations in the molecule when
compared to a single straight backbone with no kinks?
Or will it depend on the parameters I use? I mean that if my parameters
recognize the kink as an improper, then I can see the difference.
Let me know what you think.
Thanks in advance.
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