Shear flow simulation setup

From: James Starlight (
Date: Wed Apr 26 2017 - 08:51:54 CDT


My case study is mechanosensation of the protein embedded into the
membrane. I need to study the macromolecular conformational
transitions altered under mechanical deformations which are caused by
constant shear flow.
I will be gratefull for any NAMD tutorial which explains technical
details how to perform molecular simulations considering shear flow
deformations (e.g locally or applied on the membrane as shear field),
thus mimicking physiological conditions mediated by blood flow.

Thanks for help!


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