Re: TMD: initial and targeted structure does not have same number of atoms

From: Rabeta Yeasmin (
Date: Wed Mar 08 2017 - 10:20:26 CST


I have tried the way you said. Now it looks likes number of atoms is same
in initial and targeted structure but by vmd visualization, it seems like
one protein is outside the membrane and one protein is inside in
sim_struct_target.pdb (using all in selected atoms option) . When I tried
to see the structure (sim_struct_target.pdb) selecting protein or segid
MEMB option in vmd, it does not show any protein inside or outside membrane--001a113ced769eedcb054a3a818f--

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