From: Hamed Fadaei (hamed.fadaei111_at_gmail.com)
Date: Fri Dec 16 2016 - 11:35:24 CST
Dear NAMD users,
I'm wondering if there's a way to calculate the number of atoms in a group
and write it in a text file during a NAMD simulation. For example number of
water molecules around a residue (So the selection also changes during
time). I know I can do this as a processing with VMD but I need to stop the
simulation at the moment this number reaches a certain value. Can you think
of any possible way to do that?
Best regards,
Hamed
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