Re: visualizing and analyzing long simulation

From: Richard Overstreet (
Date: Mon Oct 10 2016 - 11:48:28 CDT

I usually use an ssh x11 tunnel to our cluster with nodes that have
120gb. You can also create a script that will omit explicit solvent and
write out a pdb file of just your protein.

On 10/10/2016 10:41 AM, Dhiraj Srivastava wrote:
> Hi
> I have dcd file with 100000 frames which even after stripping off
> all the water is more than 30 gb in size. Its difficult to load this
> much of data in VMD. My question is, how everyone normally look at
> these data? should I use catdcd to get rid of most of the frames and
> lets say save every 100th frame or so?
> Thanks
> Dhiraj

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