From: Chitrak Gupta (
Date: Fri Apr 08 2016 - 10:01:07 CDT

Hi Srijita,

What other molecule (apart from protein) did you have in your system? Did
you include topology files for those molecules? If not, PSFGEN will not be
able to find connectivity information for those molecules.


On Fri, Apr 8, 2016 at 9:00 AM, Srijita Paul <> wrote:

> Hi.
> Is it possible to create a psf file using a pdb file created from
> packmol? actually i want to generate a system combining to different
> molecules in packmol.but when i am trying to generate the psf file using
> psfgen the psf file only giving the information about the protein and
> others molecules are missing in the psf file.plz suggest either there is
> any other option to pack different molecules in one system without using
> packmol.
> thank you

This archive was generated by hypermail 2.1.6 : Tue Dec 27 2016 - 23:22:00 CST