Re: segmentation fault in ABF simulations

From: Jérôme Hénin (jerome.henin_at_ibpc.fr)
Date: Mon Jan 25 2016 - 11:08:22 CST

Can you try version 2.11? The binaries are available for download. If that
still gives the error, please try the nightly build, just in case, and let
us know.

Best,
Jerome

On 25 January 2016 at 18:00, Azadeh Alavi <azade.alavi_at_gmail.com> wrote:

>
> Dear Jerome
>
> Thank you very much for your reply. I am using NAMD 2.10 for
> Linux-x86_64-multicore, and version 2014-10-23 of colvar.
>
> Best regards,
> Azadeh
>
> On Mon, Jan 25, 2016 at 5:44 PM, Jérôme Hénin <jerome.henin_at_ibpc.fr>
> wrote:
>
>> Hi Azadeh,
>>
>> What version of NAMD and colvars are you using?
>>
>> Best,
>> Jerome
>>
>> On 25 January 2016 at 14:58, Azadeh Alavi <azade.alavi_at_gmail.com> wrote:
>>
>>> Dear NAMD users
>>>
>>> I am performing MD simulations of a membrane-protein system. The problem
>>> is that in my ABF simulations, the run stops with the segmentation fault. I
>>> do not have the memory problem.
>>>
>>> The last few lines of the .log file are as below:
>>>
>>> Info: useSync: 1 useProxySync: 0
>>> Info: Startup phase 10 took 0.0123789 s, 1217.61 MB of memory in use
>>> Info: Startup phase 11 took 0.000143051 s, 1217.61 MB of memory in use
>>> Info: Startup phase 12 took 0.000791073 s, 1217.83 MB of memory in use
>>> Info: Finished startup at 22.5293 s, 1217.83 MB of memory in use
>>>
>>> TCL: Running for 1000000 steps
>>>
>>>
>>>
>>> Thank you very much for your help.
>>>
>>> Best regards,
>>> Azadeh
>>>
>>
>>
>

This archive was generated by hypermail 2.1.6 : Tue Dec 27 2016 - 23:21:46 CST