calculating replica exchange acceptance ratio

From: Chitrak Gupta (
Date: Sun Jan 24 2016 - 23:16:09 CST

Dear all,

I am running replica exchange simulation using NAMD. Normally, the log file
contains the exchange acceptance ratios at the end. However, my job ended
prematurely (due to exceeding of walltime on the cluster), and the log file
does not have the acceptance ratio information at the bottom. Is there a
way I could calculate it from the log file entries? Has anyone ever done

Best regards,

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