Re: Add ions/molecules different from Autoionize defaults

From: Peter Freddolino (
Date: Sat Dec 26 2015 - 21:12:23 CST

Well, you can build them in molefacture (a vmd plugin) or with any other molecule building software; that is probably the easiest.

> On Dec 25, 2015, at 1:28 PM, Ardavan Mehdizadeh <> wrote:
> Dear Peter,
> I really appreciate your help.
> How can I get those pdb files (e.g. Sodium Acetate pdb file), If you don't mind me asking?
> I should get them from available "data banks" or I should create them with software packages?
> Thank you so much,
> Ardavan.

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