SMD with PBC

From: Mahdi Tavakol (
Date: Thu Dec 24 2015 - 00:22:36 CST

Dear NAMD users, 

I want to do SMD simulation on an infinite protein with PBC. So, both ends of my protein coincide with periodic box boundaries. 
My question is if my SMD atoms cross the periodic boundaries what happens. Does NAMD wrap SMD atoms?

Any help is appreciated in advanceMahdi Tavakol

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