From: Josh Vermaas (vermaas2_at_illinois.edu)
Date: Fri Oct 09 2015 - 09:46:07 CDT
NAMD doesn't read a topology file. It reads a psf, which lists all the
interactions explicitly. This includes a BONDS section that lists all
the bonds. Is this what you mean?
-Josh
On 10/09/2015 12:42 AM, Gianluca Interlandi wrote:
> I understand that NAMD treats the keywords BONDS and DOUBLE as
> synonyms when it reads a CHARMM topology file. Can somebody please
> point me to the location in the code where NAMD reads this?
>
> Thanks,
>
> Gianluca
>
> -----------------------------------------------------
> Gianluca Interlandi, PhD gianluca_at_u.washington.edu
> +1 (206) 685 4435
> http://artemide.bioeng.washington.edu/
>
> Research Assistant Professor at the Department of Bioengineering
> at the University of Washington, Seattle WA U.S.A.
> -----------------------------------------------------
>
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