sausage plot for a namd trajectory in vmd

From: luca belmonte (
Date: Fri Jul 31 2015 - 05:01:02 CDT

Dear all,

I have to represent fluctuations of small molecules around prostetic group.
I began with the time step, as showed in many namd tutorials, but this is
unsatisfactory for this specific case.

So, I was wondering if there is a way to represent the whole trajectory as
a sausage plot, like the ones usually used for NMR.

Could you share your experience regarding this issue with me?

Thank you for all your comments,
Best regards,

Luca Belmonte, PhD
CIBIO - Center for Integrative Biology
University of Trento
Phone: +39 0461 28 53 41
Mobile: +39 328 45 81 762

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