From: Arijit Ghosh (arijit.ghosh_at_niser.ac.in)
Date: Tue Mar 31 2015 - 22:46:49 CDT
Can someone please let me know if I can energy minimize a homology modelled
structure in NAMD? I mean to ask if it's possible in NAMD to relax the
sidechains so there are minimum sidechain clashes after the minimization. I
have one model and three mutated models.
Again, after docking a ligand, can the same be done and find the best
binding affinity (in terms of binding energy)?
P.S.: I'm really novice.
-- *Arijit Ghosh* *4th Year Integrated MSc.* *School of Biological Sciences* *National Institute of Science Education and Research* *Bhubaneswar, Orissa-751005, India* *Alternate electronic contact: arijitghosh2009_at_gmail.com <arijitghosh2009_at_gmail.com>* *Handheld: +91-986-171-9393*
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