is there a method equivalent to conformational flooding in NAMD 2.10

From: Thomas Evangelidis (
Date: Sun Jan 11 2015 - 07:43:36 CST

Dear NAMD list,

Is there any method in NAMD equivalent to Helmut Grubmuller's
Conformational Flooding? I want to open a transporter starting from an
intermediate state in which it was crystallized, but I don't know the final
state. So far, I have ran a 1 microsecond aMD simulation but nothing
happened. I conducted all my simulations with NAMD hence I hesitate
migrating to GROMACS.


Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
157 71 Athens

*Physics is the only real science. The rest are just stamp collecting.*
*- Ernest Rutherford*

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