Re: Log file is not being updated

From: BATUHAN KAV (bkav13_at_ku.edu.tr)
Date: Thu Feb 13 2014 - 11:05:13 CST

It is not physical disk.

On Mon, Feb 10, 2014 at 3:32 PM, Norman Geist <
norman.geist_at_uni-greifswald.de> wrote:

> So all your mds do definitely write to the same file system. So the
> problem must be elsewhere. Do you know if this is a samba /nfs share (file
> server) or physical local disk?
>
>
>
> Norman Geist.
>
>
>
> *Von:* owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] *Im
> Auftrag von *BATUHAN KAV
> *Gesendet:* Montag, 10. Februar 2014 13:44
> *An:* Norman Geist
> *Cc:* Namd Mailing List
>
> *Betreff:* Re: namd-l: Log file is not being updated
>
>
>
> Hi,
>
> Output is
>
> Filesystem 1K-blocks Used Available Use% Mounted on
>
> /dev/mapper/cx4_scratchp1 4432139644 2520934916 1686064968 60%
> /mnt/scratch
>
>
>
> Filesystem 1K-blocks Used Available Use% Mounted on
>
> /dev/mapper/cx4_scratchp1 4432139644 2520939184 1686060700 60%
> /mnt/scratch
>
>
>
> Filesystem 1K-blocks Used Available Use% Mounted on
>
> /dev/mapper/cx4_scratchp1 4432139644 2520939708 1686060176 60%
> /mnt/scratch
>
>
>
>
>
> On Mon, Feb 10, 2014 at 2:42 PM, Norman Geist <
> norman.geist_at_uni-greifswald.de> wrote:
>
> A different directory doesn’t imply a different disk/filesystem. What’s
> the output of
>
>
>
> df simulation1_dir
>
> df simulation2_dir
>
> df simulation3_dir
>
>
>
> Norman Geist.
>
>
>
> *Von:* owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] *Im
> Auftrag von *BATUHAN KAV
> *Gesendet:* Montag, 10. Februar 2014 13:02
> *An:* Ajasja Ljubetič
> *Cc:* namd-l
> *Betreff:* Re: namd-l: Log file is not being updated
>
>
>
> Hello Ajasja,
>
>
>
> No, all three log files are in different directories. And, no,
> outputEnergies and all other parameters are the same for all three.
>
>
>
> The point is, at the beginning all three log files were regularly updated,
> but then one of them suddenly stopped being updated.
>
>
>
> Regards,
>
> Batuhan
>
>
>
> On Mon, Feb 10, 2014 at 1:53 PM, Ajasja Ljubetič <
> ajasja.ljubetic_at_gmail.com> wrote:
>
> Hi,
>
>
>
> Are all three log files being written to the same disk and file system?
>
> Perhaps you have accidentally set *outputEnergies *to some high number in
> the configuration file for the third simulation?
>
>
>
> Best regards,
>
> Ajasja
>
>
>
> On 10 February 2014 12:41, BATUHAN KAV <bkav13_at_ku.edu.tr> wrote:
>
> Dear All,
>
>
>
> We're running NAMD 2.8. The problem is that, after a while in simulations,
> log files are not being updated.
>
>
>
> I'm running three simulations now. log files of the first two are
> regularly updated as the simulations progress; I can see at which timestep
> I am. On the other hand, for the third simulation, log file is not being
> updated for a week. Therefore, I cannot see the timesteps etc. However, all
> other files like ..dcd, ..coor and .vel files are updated, so it seems like
> the simulation is on progress.
>
>
>
> What might be the reason for that?
>
> Thank you and cheers,
>
> Batuhan
>
>
>
>
>
>
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