From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Mon Apr 15 2013 - 08:22:07 CDT
>
> But, I need to define a window in the z-dimension, rather than a single
> point.
>
> Can this be done with NAMD?
>
>
Sure it can. Have a look at the colvar module. Perhaps start with the
distanceZ<http://www.ks.uiuc.edu/Research/namd/2.9/ug/node55.html#SECTION000132260000000000000>component.
Best regards,
Ajasja
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