From: Fugui (theoreticalchem_at_163.com)
Date: Sat May 11 2013 - 10:21:04 CDT
Dear NAMD users,
I tried to converse a coarsed grained protein structure into an all-atom protein structure by using VMD. Firstly, i used the coarsed grained structure and the all-atom structure which is original structure before the MD simulation to get a starting structure which is shown in the attached pdf file. There are several long C-C bond which can cause problem in the annealing simulation in the next step. Did anyone meet the problem before?
Any suggestion is appreciated.
Best wishes
Fugui
This archive was generated by hypermail 2.1.6 : Tue Dec 31 2013 - 23:23:13 CST