Re: increment torsion restrain before minimization

From: Axel Kohlmeyer (
Date: Mon Nov 05 2012 - 07:53:39 CST

hi tina,

On Mon, Nov 5, 2012 at 2:16 PM, Tina Stokelj <> wrote:

> Hi Norman,
> I was wondering, if I construct a separate .cfg and extrabondsfile for any
> of 361 minimizations.... The next question is: How do I run multiple .cfg
> files in command line?

you can do that simply by not adding them all to the *same* command line,
but rather writing a small shell script that loops over those files and then
calls NAMD with only one .cfg as argument and redirects the output to a
separate file as well. this is standard shell script stuff. ;-)


Dr. Axel Kohlmeyer
International Centre for Theoretical Physics, Trieste. Italy.

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