Re: rmsd calculation in namd

From: Guanglei Cui (amber.mail.archive_at_gmail.com)
Date: Tue Sep 11 2012 - 10:29:53 CDT

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Hi Giacomo and Niklaus,

Thanks for the input ... will take a look at PLUMED.

Regards,
Guanglei

On Fri, Sep 7, 2012 at 3:57 PM, Guanglei Cui
<amber.mail.archive_at_gmail.com> wrote:
> Hi everyone,
>
> can someone let me know if it's possible to define the rmsd collective
> variable such that the overlay and rmsd calculation are done on
> separate sets of atoms? Thanks very much.
>
> Regards,
> Guanglei
>

-- 
Guanglei Cui

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