Re: Low CPU usage with NAMD running on linux cluster

From: Branko (bdrakuli_at_chem.bg.ac.rs)
Date: Sat Jul 28 2012 - 07:52:17 CDT

Amin,

Provide more data about the size of your system, output data, and see:

http://www.ks.uiuc.edu/Research/namd/wiki/?NamdPerformanceTuning

Branko

On 7/28/2012 8:33 AM, amin_at_imtech.res.in wrote:
> Dear all,
> I am trying to run NAMD on a linux cluster. I am using NAMD Linux-x86_64
> (64-bit Intel/AMD with ethernet). While i am able to run the program on the
> nodes listed in the nodelist file but I find that all the processes are
> running at only 8-12 % CPU usage. Can someone please guide me?
>
> Regards.
> Amin.
>
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