From: Vidhya Sankar (vidhyasankar7928_at_yahoo.com)
Date: Sat Apr 14 2012 - 11:15:01 CDT
Dear sir,
Thank you for your reply, My pdb contain seven chain so i prefer to split in to seven pdbs through scripiting .then i run .pgn with from VMD terminal window the i goth the following error
Warning: failed to set coordinate for atom CD2 LEU:31 U
Warning: failed to set coordinate for atom CD1 LEU:32 U
Warning: failed to set coordinate for atom CD2 LEU:32 U
Warning: failed to set coordinate for atom CG1 VAL:33 U
Warning: failed to set coordinate for atom CG2 VAL:33 U
Warning: failed to set coordinate for atom CG1 VAL:34 U
Warning: failed to set coordinate for atom CG2 VAL:34 U
Warning: failed to set coordinate for atom CG TYR:35 U
Warning: failed to set coordinate for atom CD1 TYR:35 U
Warning: failed to set coordinate for atom CD2 TYR:35 U
Warning: failed to set coordinate for atom CE1 TYR:35 U
Warning: failed to set coordinate for atom CE2 TYR:35 U
Warning: failed to set coordinate for atom CZ TYR:35 U
Warning: failed to set coordinate for atom OH TYR:35 U
Warning: failed to set coordinate for atom CD PRO:36 U
Warning: failed to set coordinate for atom CD1 TRP:37 U
Warning: failed to set coordinate for atom CD2 TRP:37 U
Warning: failed to set coordinate for atom NE1 TRP:37 U
Warning: failed to set coordinate for atom CE2 TRP:37 U
Warning: failed to set coordinate for atom CE3 TRP:37 U
Warning: failed to set coordinate for atom CZ2 TRP:37 U
Warning: failed to set coordinate for atom CZ3 TRP:37 U
How to solve the error ? is ther is any wrong in selection of toplogy.
Thanks in advance
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