Energy minimization of membrane

From: R. Charbel Maroun (
Date: Thu Feb 02 2012 - 06:37:42 CST


When we do energy minimization with NAMD of a protein-membrane system,
do we have to give PBC in the script, just like for a
molecular dynamics calculation or is this implicitely taken into
consideration? If not, that means that the protein-membrane system is
in vacuum and could become unstable during minimization.


C Maroun

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