From: Jernej Zidar (jernej.zidar_at_gmail.com)
Date: Wed Oct 19 2011 - 20:22:46 CDT
Why don't you try using the CHARMM parameters for nucleic acids instead?
"CHARMM-compatible Amber" parameters sounds like a bad idea to me.
Regards,
Jernej
On 20. okt. 2011, at 09:10, Ehsan Ban wrote:
> Hi Everyone,
>
> I'm trying to use CHARMM compatible Amber parameters to simulate dsdna from:
> http://www.chpc.utah.edu/~cheatham/software.html
>
> Because Amber and CHARMM use different values to convert charge values to kcal/mol changes should be made to CHARMM program's pref.dat to work with these parameter files. Does anyone know how to get around this in NAMD?
>
> Regards
> Ehsan Ban
> Rensselaer Polytechnic Institute
This archive was generated by hypermail 2.1.6 : Mon Dec 31 2012 - 23:20:54 CST