From: Namd Namd (namd_10_at_yahoo.com)
Date: Thu Sep 22 2011 - 03:33:05 CDT
Thanks for your help. I've just found a way that is also easy. I think .coord file that includes final coordinates is a pdb file .So I can chance .coord with .pdb then use it . Am I right ?
All the best
Kimden: Norman Geist <norman.geist_at_uni-greifswald.de>
Kime: 'Namd Namd' <namd_10_at_yahoo.com>
Kopya: Namd Mailing List <namd-l_at_ks.uiuc.edu>
GÃ¶nderildiÄi Tarih: 22 EylÃ¼l 2011 11:15 PerÅembe
Konu: AW: namd-l: save the last frame as a pdb file using dcd file
can easily use vmd for that. Loadyour topology file. Load your DCD. Save coordinates as pdb for last frame through the menu. You can auto this with writing a little tcl script and call it with vmd.
Or you can use the command âcatDCDâ for commandline which maybe fits your needs good also.
Von:owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im
Auftrag von Namd Namd
Gesendet: Donnerstag, 22. September 2011 09:03
Betreff: namd-l: save the last frame as a pdb file using dcd file
How can I save the last frame as a pdb file
using dcd file ?
Could you please help me to learn this procedure
Thanks for your help.
All the best.
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