Re : AW: save the last frame as a pdb file using dcd file

From: Namd Namd (namd_10_at_yahoo.com)
Date: Thu Sep 22 2011 - 03:33:05 CDT

Thanks for your help. I've just found a way that is also easy. I think .coord file that includes final coordinates is a pdb file .So I can chance .coord with .pdb then use it . Am I right ? All the best ________________________________ Kimden: Norman Geist <norman.geist_at_uni-greifswald.de> Kime: 'Namd Namd' <namd_10_at_yahoo.com> Kopya: Namd Mailing List <namd-l_at_ks.uiuc.edu> Gönderildiği Tarih: 22 Eylül 2011 11:15 Perşembe Konu: AW: namd-l: save the last frame as a pdb file using dcd file You can easily use vmd for that. Loadyour topology file. Load your DCD. Save coordinates as pdb for last frame through the menu. You can auto this with writing a little tcl script and call it with vmd. Or you can use the command “catDCD” for commandline which maybe fits your needs good also.   Good luck   Norman Geist.   Von:owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Namd Namd Gesendet: Donnerstag, 22. September 2011 09:03 An: namd-l_at_ks.uiuc.edu Betreff: namd-l: save the last frame as a pdb file using dcd file   Dear All,   How can I save the last frame as a pdb file using dcd file ?   Could you please help me to learn this procedure ?   Thanks for your help.   All the best.

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