Namd / gromacs

From: Sara baretller (sarabiocomputation_at_gmail.com)
Date: Tue Aug 16 2011 - 09:17:41 CDT

Hi All;

So i am working with gromacs and i have all the gro files but i found a tcl
scrript that combine membrane and protein (in vmd and that works for NAMD
files) that the lipid and water molecules that are overlapping with the
protein are deleted.so the script is using psf and pdb file . is it
possible to adjust the script to work for gro files. i want to work on it
and find out, but i thought that any suggestions will be helpful

script http://mccammon.ucsd.edu/~rlaw/combine.tcl.htm

Thank you

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