From: Massimiliano Porrini (M.Porrini_at_ed.ac.uk)
Date: Mon Jun 20 2011 - 07:03:09 CDT
I am running some MD trajectories of a dimer in implicit solvent.
What I would like to do is to put a harmonic potential between
the centers of mass of each monomer in order to prevent them to
go too far away one from another.
Is that possible with NAMD ?
What I found in the manual is only about harmonic restraining of
atoms, bonds, angles and dihedrals.
Many thanks in advance for your help.
All the best,
-- Dr Massimiliano Porrini Institute for Condensed Matter and Complex Systems School of Physics & Astronomy The University of Edinburgh James Clerk Maxwell Building The King's Buildings Mayfield Road Edinburgh EH9 3JZ Tel +44-(0)131-650-5229 E-mails : M.Porrini_at_ed.ac.uk mozz76_at_gmail.com maxp_at_iesl.forth.gr
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